Bioconductor Ribosome profiling

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2.8k

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deseq2 ribosome profiling

updated 5.9 years ago by Michael Love 41k • written 5.9 years ago by xiaozhuo ▴ 10

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2.2k

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deseq2 linear model ribosome profiling stats

updated 8.7 years ago by Ryan C. Thompson ★ 7.9k • written 8.8 years ago by Jake ▴ 90

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deseq2 sequencing ribosome profiling riboseq multiple factor design

updated 5.7 years ago by Michael Love 41k • written 5.8 years ago by kotcha.m ▴ 10

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2.1k

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deseq2 translation efficiency spikes ribosome profiling

7.5 years ago GFM ▴ 20

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1.9k

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biomart bioconductor grangeslist cds ribosome profiling

updated 6.9 years ago by Hervé Pagès 16k • written 6.9 years ago by Walter F. Baumann ▴ 10

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1.6k

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riboseqr ribosome profiling

updated 8.2 years ago by Thomas J Hardcastle ▴ 180 • written 8.2 years ago by alper.celik • 0

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R riboseqr ribosome profiling

8.5 years ago ohtack9 • 0

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deseq2 ribosome profiling wald lrt

updated 5.3 years ago by Michael Love 41k • written 5.3 years ago by indrik.wijaya ▴ 20

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aligning ribosome profiling RNA-Seq

4.7 years ago Crispy • 0

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R riboseqr ribosome profiling

6.2 years ago bsad • 0

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826

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deseq2 differential translation ribosome profiling

updated 4.5 years ago by Michael Love 41k • written 4.5 years ago by katerinadouka91 • 0

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721

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riboprofiling ribosome profiling

6.7 years ago nicholsonangela7 • 0

12 results • Page 1 of 1

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Comment: SGSeq: moving toward diffex from SGSeq analysis by Sara • 0

Thank you for your response. I have another question about saving the sgvc result as a CSV file. I would appreciate your help, please. ``` …

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

I tried different block lengths first and considered 100000 to be ideal because of the almost similar inter-range distance. S1= bootRange…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k

The segmentation and block length are key parameters. We recommend for example blocks of length ~500kb. It would help if you would post yo…

Answer: Handling multiple differential expression comparisons by Michael Love 41k

It's typical that results are presented with each group having its own FDR control. So presenting each comparison with the adjusted p-va…

Comment: Too many significant genes when integrating gtex and tcga by ATpoint ★ 4.1k

These two datasets are from completely different experiments / batches. It is utterly meaningless to compare them. I would suggest comparat…

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package goseq seems to be not available on the latest version of R

Print Differentially Expressed Exons From Dexseq Results

Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-

Answer: limma Intercept vs No-intercept models completely changing DMR results?

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